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3d umap plot  (Plotly Technologies Inc)

 
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    Plotly Technologies Inc 3d umap plot
    Cell-type-specific regulatory networks and key regulators for root hair differentiation. a Mapping the information of chromatin openness revealed by snATAC-seq data into the cell clusters classified by snRNA-seq. b <t>UMAP</t> visualization of 10 cell clusters were annotated by both snRNA-seq and snATAC-seq for wheat root. Each dot represents a single cell. c High correlation between chromatin accessibility and expression of marker genes for each corresponding clusters. Left part is the open chromatin scores calculated based on snATAC-seq, Right part is the expression level calculated based on snRNA-seq. d Top5 representative TF regulons for each cluster identified by SCENIC4. The abbreviated names of TF regulons were followed with the chromosome name to indicate their location in subgenomes. e Root transections of taspl14 knock-out line and wild type. The protoxylem pores and companion cells were marked with yellow arrow and pink arrow head, respectively. Bar is 100 μm. f taspl14 knock-out line showed reduced companion cells and increased protoxylem. g BAM1 and LOB were downregulated in root of taspl14 knock-out lines. h The accessible chromatin regions (ACRs) of BAM1 homolog ( TraesCS4D02G235800 ). i Differentiated trajectories of root hair. Colors of dots are corresponding to cell clusters. Start indicates the initiation of the pseudo-time trajectory. Terminal indicates the end of the pseudo-time trajectory. j Trajectory network for root hair differentiation identified the key regulators for cell identity transition
    3d Umap Plot, supplied by Plotly Technologies Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/3d umap plot/product/Plotly Technologies Inc
    Average 90 stars, based on 1 article reviews
    3d umap plot - by Bioz Stars, 2026-03
    90/100 stars

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    1) Product Images from "Asymmetric gene expression and cell-type-specific regulatory networks in the root of bread wheat revealed by single-cell multiomics analysis"

    Article Title: Asymmetric gene expression and cell-type-specific regulatory networks in the root of bread wheat revealed by single-cell multiomics analysis

    Journal: Genome Biology

    doi: 10.1186/s13059-023-02908-x

    Cell-type-specific regulatory networks and key regulators for root hair differentiation. a Mapping the information of chromatin openness revealed by snATAC-seq data into the cell clusters classified by snRNA-seq. b UMAP visualization of 10 cell clusters were annotated by both snRNA-seq and snATAC-seq for wheat root. Each dot represents a single cell. c High correlation between chromatin accessibility and expression of marker genes for each corresponding clusters. Left part is the open chromatin scores calculated based on snATAC-seq, Right part is the expression level calculated based on snRNA-seq. d Top5 representative TF regulons for each cluster identified by SCENIC4. The abbreviated names of TF regulons were followed with the chromosome name to indicate their location in subgenomes. e Root transections of taspl14 knock-out line and wild type. The protoxylem pores and companion cells were marked with yellow arrow and pink arrow head, respectively. Bar is 100 μm. f taspl14 knock-out line showed reduced companion cells and increased protoxylem. g BAM1 and LOB were downregulated in root of taspl14 knock-out lines. h The accessible chromatin regions (ACRs) of BAM1 homolog ( TraesCS4D02G235800 ). i Differentiated trajectories of root hair. Colors of dots are corresponding to cell clusters. Start indicates the initiation of the pseudo-time trajectory. Terminal indicates the end of the pseudo-time trajectory. j Trajectory network for root hair differentiation identified the key regulators for cell identity transition
    Figure Legend Snippet: Cell-type-specific regulatory networks and key regulators for root hair differentiation. a Mapping the information of chromatin openness revealed by snATAC-seq data into the cell clusters classified by snRNA-seq. b UMAP visualization of 10 cell clusters were annotated by both snRNA-seq and snATAC-seq for wheat root. Each dot represents a single cell. c High correlation between chromatin accessibility and expression of marker genes for each corresponding clusters. Left part is the open chromatin scores calculated based on snATAC-seq, Right part is the expression level calculated based on snRNA-seq. d Top5 representative TF regulons for each cluster identified by SCENIC4. The abbreviated names of TF regulons were followed with the chromosome name to indicate their location in subgenomes. e Root transections of taspl14 knock-out line and wild type. The protoxylem pores and companion cells were marked with yellow arrow and pink arrow head, respectively. Bar is 100 μm. f taspl14 knock-out line showed reduced companion cells and increased protoxylem. g BAM1 and LOB were downregulated in root of taspl14 knock-out lines. h The accessible chromatin regions (ACRs) of BAM1 homolog ( TraesCS4D02G235800 ). i Differentiated trajectories of root hair. Colors of dots are corresponding to cell clusters. Start indicates the initiation of the pseudo-time trajectory. Terminal indicates the end of the pseudo-time trajectory. j Trajectory network for root hair differentiation identified the key regulators for cell identity transition

    Techniques Used: Expressing, Marker, Knock-Out



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    3d umap plot  (Plotly Technologies Inc)
    90
    Plotly Technologies Inc 3d umap plot
    Cell-type-specific regulatory networks and key regulators for root hair differentiation. a Mapping the information of chromatin openness revealed by snATAC-seq data into the cell clusters classified by snRNA-seq. b <t>UMAP</t> visualization of 10 cell clusters were annotated by both snRNA-seq and snATAC-seq for wheat root. Each dot represents a single cell. c High correlation between chromatin accessibility and expression of marker genes for each corresponding clusters. Left part is the open chromatin scores calculated based on snATAC-seq, Right part is the expression level calculated based on snRNA-seq. d Top5 representative TF regulons for each cluster identified by SCENIC4. The abbreviated names of TF regulons were followed with the chromosome name to indicate their location in subgenomes. e Root transections of taspl14 knock-out line and wild type. The protoxylem pores and companion cells were marked with yellow arrow and pink arrow head, respectively. Bar is 100 μm. f taspl14 knock-out line showed reduced companion cells and increased protoxylem. g BAM1 and LOB were downregulated in root of taspl14 knock-out lines. h The accessible chromatin regions (ACRs) of BAM1 homolog ( TraesCS4D02G235800 ). i Differentiated trajectories of root hair. Colors of dots are corresponding to cell clusters. Start indicates the initiation of the pseudo-time trajectory. Terminal indicates the end of the pseudo-time trajectory. j Trajectory network for root hair differentiation identified the key regulators for cell identity transition
    3d Umap Plot, supplied by Plotly Technologies Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/3d umap plot/product/Plotly Technologies Inc
    Average 90 stars, based on 1 article reviews
    3d umap plot - by Bioz Stars, 2026-03
    90/100 stars
    		  Buy from Supplier

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    Cell-type-specific regulatory networks and key regulators for root hair differentiation. a Mapping the information of chromatin openness revealed by snATAC-seq data into the cell clusters classified by snRNA-seq. b UMAP visualization of 10 cell clusters were annotated by both snRNA-seq and snATAC-seq for wheat root. Each dot represents a single cell. c High correlation between chromatin accessibility and expression of marker genes for each corresponding clusters. Left part is the open chromatin scores calculated based on snATAC-seq, Right part is the expression level calculated based on snRNA-seq. d Top5 representative TF regulons for each cluster identified by SCENIC4. The abbreviated names of TF regulons were followed with the chromosome name to indicate their location in subgenomes. e Root transections of taspl14 knock-out line and wild type. The protoxylem pores and companion cells were marked with yellow arrow and pink arrow head, respectively. Bar is 100 μm. f taspl14 knock-out line showed reduced companion cells and increased protoxylem. g BAM1 and LOB were downregulated in root of taspl14 knock-out lines. h The accessible chromatin regions (ACRs) of BAM1 homolog ( TraesCS4D02G235800 ). i Differentiated trajectories of root hair. Colors of dots are corresponding to cell clusters. Start indicates the initiation of the pseudo-time trajectory. Terminal indicates the end of the pseudo-time trajectory. j Trajectory network for root hair differentiation identified the key regulators for cell identity transition

    Journal: Genome Biology

    Article Title: Asymmetric gene expression and cell-type-specific regulatory networks in the root of bread wheat revealed by single-cell multiomics analysis

    doi: 10.1186/s13059-023-02908-x

    Figure Lengend Snippet: Cell-type-specific regulatory networks and key regulators for root hair differentiation. a Mapping the information of chromatin openness revealed by snATAC-seq data into the cell clusters classified by snRNA-seq. b UMAP visualization of 10 cell clusters were annotated by both snRNA-seq and snATAC-seq for wheat root. Each dot represents a single cell. c High correlation between chromatin accessibility and expression of marker genes for each corresponding clusters. Left part is the open chromatin scores calculated based on snATAC-seq, Right part is the expression level calculated based on snRNA-seq. d Top5 representative TF regulons for each cluster identified by SCENIC4. The abbreviated names of TF regulons were followed with the chromosome name to indicate their location in subgenomes. e Root transections of taspl14 knock-out line and wild type. The protoxylem pores and companion cells were marked with yellow arrow and pink arrow head, respectively. Bar is 100 μm. f taspl14 knock-out line showed reduced companion cells and increased protoxylem. g BAM1 and LOB were downregulated in root of taspl14 knock-out lines. h The accessible chromatin regions (ACRs) of BAM1 homolog ( TraesCS4D02G235800 ). i Differentiated trajectories of root hair. Colors of dots are corresponding to cell clusters. Start indicates the initiation of the pseudo-time trajectory. Terminal indicates the end of the pseudo-time trajectory. j Trajectory network for root hair differentiation identified the key regulators for cell identity transition

    Article Snippet: The 3D UMAP plot was visualized by R with Plotly package (v4.9.4.1).

    Techniques: Expressing, Marker, Knock-Out